Package: msigdbr 7.5.1.9001

msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Authors:Igor Dolgalev [aut, cre]

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msigdbr.pdf |msigdbr.html✨
msigdbr/json (API)
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Bug tracker:https://github.com/igordot/msigdbr/issues

On CRAN:

enrichment-analysisgene-setsgenomicsgseamsigdbpathway-analysispathways

11 exports 69 stars 5.27 score 17 dependencies 21 dependents 17 mentions 2.4k scripts 6.6k downloads

Last updated 2 years agofrom:04e5dc2a8a. Checks:OK: 7. Indexed: yes.

Exports::=.data%>%as_labelas_nameenquoenquosmsigdbrmsigdbr_collectionsmsigdbr_show_speciesmsigdbr_species

Dependencies:babelgeneclidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr