{
  "_id": "6a4a0e74b9bf02698bd56b13",
  "Type": "Package",
  "Package": "msigdbr",
  "Title": "MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format",
  "Version": "26.1.0",
  "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-4451-126X\"))",
  "Description": "Provides the 'Molecular Signatures Database' (MSigDB) gene\nsets typically used with the 'Gene Set Enrichment Analysis'\n(GSEA) software (Subramanian et al. 2005\n<doi:10.1073/pnas.0506580102>, Liberzon et al. 2015\n<doi:10.1016/j.cels.2015.12.004>, Castanza et al. 2023\n<doi:10.1038/s41592-023-02014-7>) as an R data frame. The\npackage includes the human genes as listed in MSigDB as well as\nthe corresponding symbols and IDs for frequently studied model\norganisms such as mouse, rat, pig, fly, and yeast.",
  "License": "MIT + file LICENSE",
  "URL": "https://igordot.github.io/msigdbr/",
  "BugReports": "https://github.com/igordot/msigdbr/issues",
  "Config/Needs/website": "rmarkdown",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://igordot.r-universe.dev",
  "Date/Publication": "2026-03-12 13:46:21 UTC",
  "RemoteUrl": "https://github.com/igordot/msigdbr",
  "RemoteRef": "v26.1.0",
  "RemoteSha": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-10 07:25:39 UTC",
    "User": "root"
  },
  "Author": "Igor Dolgalev [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4451-126X>)",
  "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
  "_user": "igordot",
  "_type": "src",
  "_file": "msigdbr_26.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/b48c45e2a0100547d3c2b59cbb695351995b79afdfd8320ac4da75023e910d72",
  "_filesize": 93527,
  "_sha256": "b48c45e2a0100547d3c2b59cbb695351995b79afdfd8320ac4da75023e910d72",
  "_expires": "2026-10-13T07:57:39.000Z",
  "_created": "2026-06-10T07:25:39.000Z",
  "_published": "2026-07-05T07:57:40.800Z",
  "_jobs": [
    {
      "job": 85204905401,
      "time": 181,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7529179544"
    },
    {
      "job": 85204905362,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7529163769"
    },
    {
      "job": 85204905472,
      "time": 96,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7529362262"
    },
    {
      "job": 85204905456,
      "time": 133,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7529178260"
    },
    {
      "job": 85204905212,
      "time": 183,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7529120744"
    },
    {
      "job": 85204905501,
      "time": 107,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7529155589"
    },
    {
      "job": 85204905480,
      "time": 109,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7529155688"
    },
    {
      "job": 85204905485,
      "time": 91,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7529152123"
    },
    {
      "job": 85204905384,
      "time": 114,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7529157662"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062",
  "_status": "success",
  "_upstream": "https://github.com/igordot/msigdbr",
  "_commit": {
    "id": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
    "author": "igor <6363505+igordot@users.noreply.github.com>",
    "committer": "igor <6363505+igordot@users.noreply.github.com>",
    "message": "Prepare for CRAN release 26.1.0\n",
    "time": 1773323181
  },
  "_maintainer": {
    "name": "Igor Dolgalev",
    "email": "igor.dolgalev@nyumc.org",
    "login": "igordot",
    "description": "",
    "uuid": 6363505,
    "orcid": "0000-0003-4451-126X"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "babelgene",
      "version": ">= 22.9",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.1",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "version": ">= 1.2.0",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "igordot",
  "_selfowned": true,
  "_usedby": 23,
  "_updates": [
    {
      "week": "2025-27",
      "n": 12
    },
    {
      "week": "2025-29",
      "n": 6
    },
    {
      "week": "2025-30",
      "n": 3
    },
    {
      "week": "2026-11",
      "n": 5
    }
  ],
  "_tags": [
    {
      "name": "v25.1.0",
      "date": "2025-07-03"
    },
    {
      "name": "v25.1.1",
      "date": "2025-07-22"
    },
    {
      "name": "v26.1.0",
      "date": "2026-03-12"
    }
  ],
  "_topics": [
    "enrichment-analysis",
    "gene-sets",
    "genomics",
    "gsea",
    "msigdb",
    "pathway-analysis",
    "pathways"
  ],
  "_stars": 86,
  "_contributors": [
    {
      "user": "igordot",
      "count": 159,
      "uuid": 6363505
    },
    {
      "user": "smped",
      "count": 1,
      "uuid": 8252496
    },
    {
      "user": "vreuter",
      "count": 1,
      "uuid": 12036370
    }
  ],
  "_userbio": {
    "uuid": 6363505,
    "type": "user",
    "name": "igor"
  },
  "_downloads": {
    "count": 24590,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/msigdbr"
  },
  "_mentions": 17,
  "_devurl": "https://github.com/igordot/msigdbr",
  "_pkgdown": "https://igordot.github.io/msigdbr/",
  "_searchresults": 5848,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/msigdbr.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/igordot/msigdbr",
  "_realowner": "igordot",
  "_cranurl": true,
  "_releases": [
    {
      "version": "6.1.1",
      "date": "2018-04-12"
    },
    {
      "version": "6.2.1",
      "date": "2018-10-09"
    },
    {
      "version": "7.0.1",
      "date": "2019-09-04"
    },
    {
      "version": "7.1.1",
      "date": "2020-05-14"
    },
    {
      "version": "7.2.1",
      "date": "2020-10-02"
    },
    {
      "version": "7.4.1",
      "date": "2021-05-05"
    },
    {
      "version": "7.5.1",
      "date": "2022-03-30"
    },
    {
      "version": "10.0.0",
      "date": "2025-03-12"
    },
    {
      "version": "10.0.1",
      "date": "2025-03-22"
    },
    {
      "version": "10.0.2",
      "date": "2025-04-14"
    },
    {
      "version": "24.1.0",
      "date": "2025-05-13"
    },
    {
      "version": "25.1.0",
      "date": "2025-07-03"
    },
    {
      "version": "25.1.1",
      "date": "2025-07-21"
    },
    {
      "version": "26.1.0",
      "date": "2026-03-12"
    }
  ],
  "_exports": [
    "msigdbr",
    "msigdbr_collections",
    "msigdbr_species"
  ],
  "_help": [
    {
      "page": "msigdbr",
      "title": "Retrieve the gene sets data frame",
      "topics": [
        "msigdbr"
      ]
    },
    {
      "page": "msigdbr_collections",
      "title": "List the collections available in the msigdbr package",
      "topics": [
        "msigdbr_collections"
      ]
    },
    {
      "page": "msigdbr_species",
      "title": "List the species available in the msigdbr package",
      "topics": [
        "msigdbr_species"
      ]
    }
  ],
  "_readme": "https://github.com/igordot/msigdbr/raw/v26.1.0/README.md",
  "_rundeps": [
    "assertthat",
    "babelgene",
    "cli",
    "curl",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 12.533173425997305,
  "_indexed": true,
  "_nocasepkg": "msigdbr",
  "_universes": [
    "igordot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "26.1.0",
      "date": "2026-06-10T07:28:38.000Z",
      "distro": "noble",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/f71e86bac594adc7a88c8674574781290555ab0c658296cb7ec6e8d118f513c4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "26.1.0",
      "date": "2026-06-10T07:27:53.000Z",
      "distro": "noble",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/4f30641902bb2c4eddc40232e7af0775834ad0beaa24c722c1c81fbc61c989cb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "26.1.0",
      "date": "2026-06-10T07:37:43.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/999dffc44cdbd3674aeb232a1aa8c1b6304f058c5ae06b335ffc4648f4f999c5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "26.1.0",
      "date": "2026-06-10T07:28:32.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/9ef198e22e9f4ad055e57b6bc8e604ec8f55696c0a7d0d9d31e01591902d1cf0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "26.1.0",
      "date": "2026-06-10T07:27:43.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/8c5bc78f61675dd6bdcb1d8441a9e8d67d3f07efba7dc9707cc1b036fbb6c081",
      "status": "success",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "26.1.0",
      "date": "2026-06-10T07:27:16.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/3a9e09b99806872642513188314f049d18eb4d199f61e448b3bf8071808cd926",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "26.1.0",
      "date": "2026-06-10T07:27:08.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/9a44b7436aba5b1ecc545aefd876d081dd4816d1a882c9d643cbab20476d1d66",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "26.1.0",
      "date": "2026-06-10T07:27:31.000Z",
      "commit": "083782653ca958f6f1e701a4d3b1d042584fe2ec",
      "fileid": "https://r2.ropensci.org/eecdf9341aaa7a516b80b29b596e5e8fd9b50c8d31d97fb786eaeb1a48e0c542",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/27260152062"
    }
  ]
}