Package: altmem 0.0.0.9000
altmem: Alternative Interface to cytoMEM Marker Enrichment Modeling
Automatically generate and display quantitative labels for cell populations that have been identified from flow cytometry, mass cytometry, and single-cell RNA-seq data.
Authors:
altmem_0.0.0.9000.tar.gz
altmem_0.0.0.9000.zip(r-4.7)altmem_0.0.0.9000.zip(r-4.6)altmem_0.0.0.9000.zip(r-4.5)
altmem_0.0.0.9000.tgz(r-4.6-any)altmem_0.0.0.9000.tgz(r-4.5-any)
altmem_0.0.0.9000.tar.gz(r-4.7-any)altmem_0.0.0.9000.tar.gz(r-4.6-any)
altmem_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
altmem/json (API)
| # Install 'altmem' in R: |
| install.packages('altmem', repos = c('https://igordot.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/igordot/altmem/issues
Pkgdown/docs site:https://igordot.github.io
Last updated from:767ce75f15. Checks:2 ERROR, 7 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 386 | ||
| source / vignettes | OK | 271 | ||
| linux-release-x86_64 | OK | 373 | ||
| macos-release-arm64 | OK | 248 | ||
| macos-oldrel-arm64 | OK | 269 | ||
| windows-devel | ERROR | 688 | ||
| windows-release | OK | 602 | ||
| windows-oldrel | OK | 519 | ||
| wasm-release | OK | 210 |
Exports:altmemmem_heatmapmem_labels
Dependencies:abindBHBiobaseBiocGenericsbiocmakebitopscaToolscirclizeclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncytolibcytoMEMDelayedArraydigestdir.expirydoParallelfilelockflowCoreforeachgenericsGenomicRangesGetoptLongGlobalOptionsgplotsgtoolsIRangesiteratorsKernSmoothlatticeMatrixMatrixGenericsmatrixStatspngRColorBrewerRcppRhdf5librjsonRProtoBufLibS4ArraysS4VectorsSeqinfoshapeSparseArraySummarizedExperimentXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Marker Enrichment Modeling | altmem |
| Heatmap of MEM scores | mem_heatmap |
| MEM-enriched cluster labels | mem_labels |
