{
  "_id": "6a1f2f22b401979e73426fc6",
  "Package": "altmem",
  "Title": "Alternative Interface to cytoMEM Marker Enrichment Modeling",
  "Version": "0.0.0.9000",
  "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"))",
  "Description": "Automatically generate and display quantitative labels for\ncell populations that have been identified from flow cytometry,\nmass cytometry, and single-cell RNA-seq data.",
  "License": "MIT + file LICENSE",
  "URL": "https://igordot.github.io/altmem/",
  "biocViews": "",
  "Config/Needs/website": "rmarkdown",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libpng-dev libssl-dev perl zlib1g-dev",
  "Repository": "https://igordot.r-universe.dev",
  "Date/Publication": "2026-04-15 16:01:57 UTC",
  "RemoteUrl": "https://github.com/igordot/altmem",
  "RemoteRef": "HEAD",
  "RemoteSha": "767ce75f15252f5f244ee170a28a44d8fca632ca",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 09:05:19 UTC",
    "User": "root"
  },
  "Author": "Igor Dolgalev [aut, cre]",
  "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
  "MD5sum": "d0c8ddc65d457886868733eb1a40b6c8",
  "_user": "igordot",
  "_type": "src",
  "_file": "altmem_0.0.0.9000.tar.gz",
  "_fileid": "74c8e51a9da883f9517a4ee627064838163be4c3fba4b9cf7d4be02b653ba937",
  "_filesize": 90517,
  "_sha256": "74c8e51a9da883f9517a4ee627064838163be4c3fba4b9cf7d4be02b653ba937",
  "_created": "2026-05-15T09:05:19.000Z",
  "_published": "2026-06-02T19:29:38.594Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79154482790,
      "time": 386,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7013775357"
    },
    {
      "job": 79154483184,
      "time": 373,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013771804"
    },
    {
      "job": 79154483384,
      "time": 269,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013741345"
    },
    {
      "job": 79154483067,
      "time": 248,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013735033"
    },
    {
      "job": 79154482254,
      "time": 271,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013664967"
    },
    {
      "job": 79154482069,
      "time": 210,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367783354"
    },
    {
      "job": 79154482869,
      "time": 688,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7013861375"
    },
    {
      "job": 79154483304,
      "time": 519,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013814024"
    },
    {
      "job": 79154483250,
      "time": 602,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013836796"
    }
  ],
  "_buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/igordot/altmem",
  "_commit": {
    "id": "767ce75f15252f5f244ee170a28a44d8fca632ca",
    "author": "igor <6363505+igordot@users.noreply.github.com>",
    "committer": "igor <6363505+igordot@users.noreply.github.com>",
    "message": "Clean up documentation\n",
    "time": 1776268917
  },
  "_maintainer": {
    "name": "Igor Dolgalev",
    "email": "igor.dolgalev@nyumc.org",
    "login": "igordot",
    "uuid": 6363505
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4",
      "role": "Depends"
    },
    {
      "package": "circlize",
      "role": "Imports"
    },
    {
      "package": "ComplexHeatmap",
      "role": "Imports"
    },
    {
      "package": "cytoMEM",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "CATALYST",
      "role": "Suggests"
    },
    {
      "package": "HDCytoData",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "igordot",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-12",
      "n": 13
    },
    {
      "week": "2026-13",
      "n": 4
    },
    {
      "week": "2026-16",
      "n": 11
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "igordot",
      "count": 28,
      "uuid": 6363505
    }
  ],
  "_userbio": {
    "uuid": 6363505,
    "type": "user",
    "name": "igor"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/altmem"
  },
  "_devurl": "https://github.com/igordot/altmem",
  "_pkgdown": "https://igordot.github.io/altmem/",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/altmem.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "altmem",
    "mem_heatmap",
    "mem_labels"
  ],
  "_help": [
    {
      "page": "altmem",
      "title": "Marker Enrichment Modeling",
      "topics": [
        "altmem"
      ]
    },
    {
      "page": "mem_heatmap",
      "title": "Heatmap of MEM scores",
      "topics": [
        "mem_heatmap"
      ]
    },
    {
      "page": "mem_labels",
      "title": "MEM-enriched cluster labels",
      "topics": [
        "mem_labels"
      ]
    }
  ],
  "_readme": "https://github.com/igordot/altmem/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "BH",
    "Biobase",
    "BiocGenerics",
    "biocmake",
    "bitops",
    "caTools",
    "circlize",
    "clue",
    "cluster",
    "codetools",
    "colorspace",
    "ComplexHeatmap",
    "cpp11",
    "crayon",
    "cytolib",
    "cytoMEM",
    "DelayedArray",
    "digest",
    "dir.expiry",
    "doParallel",
    "filelock",
    "flowCore",
    "foreach",
    "generics",
    "GenomicRanges",
    "GetoptLong",
    "GlobalOptions",
    "gplots",
    "gtools",
    "IRanges",
    "iterators",
    "KernSmooth",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "png",
    "RColorBrewer",
    "Rcpp",
    "Rhdf5lib",
    "rjson",
    "RProtoBufLib",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "shape",
    "SparseArray",
    "SummarizedExperiment",
    "XVector"
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "altmem",
  "_universes": [
    "igordot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:09:44.000Z",
      "distro": "noble",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "c42d58ab7f68d966eb53ef2a3dbbeb55365f1d3981d856d8d3053bc73456b980",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:09:30.000Z",
      "distro": "noble",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "1db9f819898b66c7106424676ef617d75ea6a9d3aac15cb6e18f4d904e02da1c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:08:10.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "b04250b033c29d2e32c3dcd150a823dca7682768d2721a62c777bd8599b02bc2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:08:08.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "c780de185b9de16dae1249fb6a4ff9a49e9046d9224a4a60d59afcb03cb51cdc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:14:24.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "220215e3fce2157135b6590fe055e0ab2579e2b6a17b272e59cf473b66927855",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:12:02.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "db67c525fff24c9955396ad938f0feef12cdb421df1dfe840d5f1abb22c7e585",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-15T09:13:13.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "5c0d6e36623aed8ec6f015ed2bad2dd8c2618275b58a613cf181f2e6d9127cba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-06-02T19:29:16.000Z",
      "commit": "767ce75f15252f5f244ee170a28a44d8fca632ca",
      "fileid": "65b77f193ed698b221e85277f7270cf9a9481ce38db0754c77e3f0299766be83",
      "status": "success",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25909476535"
    }
  ]
}