Type: Package
Package: phenomenalist
Title: Analysis Toolkit for PhenoCycler (CODEX) Data in R
Version: 0.0.0.9003
Authors@R: 
    person("Igor", "Dolgalev", , "igor.dolgalev@nyumc.org", role = c("aut", "cre"))
Description: A collection of tools for cleaning, clustering, and
        plotting PhenoCycler (CODEX) data.
License: MIT + file LICENSE
URL: https://igordot.github.io/phenomenalist/
BugReports: https://github.com/igordot/phenomenalist/issues
Depends: ggplot2, R (>= 4.1), SpatialExperiment
Imports: ComplexHeatmap, cowplot, data.table, dplyr, FNN, ggsci, glue,
        igraph (>= 1.2.7), janitor (>= 1.2.0), methods, RColorBrewer,
        readr, rlang (>= 0.4.11), scattermore, scran, scuttle,
        SingleCellExperiment, stringr, SummarizedExperiment, tibble,
        tidyr, tidyselect, uwot
Suggests: covr, knitr, remotes, rmarkdown, roxygen2, testthat (>=
        3.0.0)
VignetteBuilder: knitr
biocViews:
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libglpk-dev libmagick++-dev gsfonts libicu-dev
        libpng-dev libxml2-dev libssl-dev perl libx11-dev zlib1g-dev
Repository: https://igordot.r-universe.dev
Date/Publication: 2024-02-26 19:19:57 UTC
RemoteUrl: https://github.com/igordot/phenomenalist
RemoteRef: HEAD
RemoteSha: c35f531d0035ac6ea879bfe1b0340c6b5cc6b09e
NeedsCompilation: no
Packaged: 2026-06-12 07:41:55 UTC; root
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev@nyumc.org>