Package: phenomenalist 0.0.0.9003

phenomenalist: Analysis Toolkit for PhenoCycler (CODEX) Data in R

A collection of tools for cleaning, clustering, and plotting PhenoCycler (CODEX) data.

Authors:Igor Dolgalev [aut, cre]

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phenomenalist.pdf |phenomenalist.html✨
phenomenalist/json (API)

# Install 'phenomenalist' in R:
install.packages('phenomenalist', repos = c('https://igordot.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/igordot/phenomenalist/issues

On CRAN:

codexphenocycler

2.65 score 3 stars 1 scripts 14 exports 137 dependencies

Last updated 8 months agofrom:c35f531d00. Checks:OK: 2 NOTE: 4 ERROR: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 24 2024
R-4.5-winNOTEOct 24 2024
R-4.5-linuxNOTEOct 24 2024
R-4.4-winNOTEOct 24 2024
R-4.4-macNOTEOct 24 2024
R-4.3-winOKOct 24 2024
R-4.3-macERROROct 24 2024

Exports::=.dataas_labelas_nameclustercreate_objectenquoenquosplot_distributionplot_drplot_heatmapplot_spatialrun_umaptransform

Dependencies:abindaskpassassortheadbeachmatBHBiobaseBiocFileCacheBiocGenericsBiocNeighborsBiocParallelBiocSingularbitbit64blobblustercachemcirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdoParalleldplyrdqrngedgeRfansifarverfastmapfilelockFNNforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2ggsciGlobalOptionsgluegtablehmshttrigraphIRangesirlbaisobanditeratorsjanitorjsonlitelabelinglambda.rlatticelifecyclelimmalocfitlubridatemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemetapodmgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6RColorBrewerRcppRcppAnnoyRcppEigenRcppProgressreadrrjsonrlangRSpectraRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesscattermorescranscuttleshapeSingleCellExperimentsitmosnakecasesnowSparseArraySpatialExperimentstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangetzdbUCSC.utilsutf8uwotvctrsviridisLitevroomwithrXVectorzlibbioc