Package: phenomenalist 0.0.0.9003

phenomenalist: Analysis Toolkit for PhenoCycler (CODEX) Data in R

A collection of tools for cleaning, clustering, and plotting PhenoCycler (CODEX) data.

Authors:Igor Dolgalev [aut, cre]

phenomenalist_0.0.0.9003.tar.gz
phenomenalist_0.0.0.9003.zip(r-4.7)phenomenalist_0.0.0.9003.zip(r-4.6)phenomenalist_0.0.0.9003.zip(r-4.5)
phenomenalist_0.0.0.9003.tgz(r-4.6-any)phenomenalist_0.0.0.9003.tgz(r-4.5-any)
phenomenalist_0.0.0.9003.tar.gz(r-4.7-any)phenomenalist_0.0.0.9003.tar.gz(r-4.6-any)
phenomenalist_0.0.0.9003.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phenomenalist/json (API)

# Install 'phenomenalist' in R:
install.packages('phenomenalist', repos = c('https://igordot.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igordot/phenomenalist/issues

Pkgdown/docs site:https://igordot.github.io

On CRAN:

Conda:

codexphenocycler

2.18 score 3 stars 3 scripts 14 exports 128 dependencies

Last updated from:c35f531d00. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE380
source / vignettesOK276
linux-release-x86_64NOTE354
macos-release-arm64NOTE213
macos-oldrel-arm64NOTE222
windows-develNOTE351
windows-releaseNOTE273
windows-oldrelNOTE285
wasm-releaseOK166

Exports::=.dataas_labelas_nameclustercreate_objectenquoenquosplot_distributionplot_drplot_heatmapplot_spatialrun_umaptransform

Dependencies:abindaskpassassortheadbeachmatBHBiobaseBiocFileCacheBiocGenericsBiocNeighborsBiocParallelBiocSingularbitbit64blobblustercachemcirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdoParalleldplyrdqrngedgeRfarverfastmapfilelockFNNforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggplot2ggsciGlobalOptionsgluegtablehmshttr2igraphIRangesirlbaisobanditeratorsjanitorlabelinglambda.rlatticelifecyclelimmalocfitlubridatemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemetapodopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppRcppAnnoyRcppEigenRcppProgressreadrrjsonrlangRSpectraRSQLitersvdS4ArraysS4VectorsS7ScaledMatrixscalesscattermorescranscuttleSeqinfoshapeSingleCellExperimentsitmosnakecasesnowSparseArraySpatialExperimentstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangetzdbutf8uwotvctrsviridisLitevroomwithrXVector