Package: phenomenalist 0.0.0.9003

phenomenalist: Analysis Toolkit for PhenoCycler (CODEX) Data in R

A collection of tools for cleaning, clustering, and plotting PhenoCycler (CODEX) data.

Authors:Igor Dolgalev [aut, cre]

phenomenalist_0.0.0.9003.tar.gz
phenomenalist_0.0.0.9003.zip(r-4.5)phenomenalist_0.0.0.9003.zip(r-4.4)phenomenalist_0.0.0.9003.zip(r-4.3)
phenomenalist_0.0.0.9003.tgz(r-4.4-any)phenomenalist_0.0.0.9003.tgz(r-4.3-any)
phenomenalist_0.0.0.9003.tar.gz(r-4.5-noble)phenomenalist_0.0.0.9003.tar.gz(r-4.4-noble)
phenomenalist_0.0.0.9003.tgz(r-4.4-emscripten)phenomenalist_0.0.0.9003.tgz(r-4.3-emscripten)
phenomenalist.pdf |phenomenalist.html✨
phenomenalist/json (API)

# Install 'phenomenalist' in R:
install.packages('phenomenalist', repos = c('https://igordot.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igordot/phenomenalist/issues

Pkgdown site:https://igordot.github.io

On CRAN:

codexphenocycler

2.18 score 3 stars 1 scripts 14 exports 136 dependencies

Last updated 12 months agofrom:c35f531d00. Checks:2 OK, 4 NOTE, 1 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 22 2025
R-4.5-winNOTEJan 22 2025
R-4.5-linuxNOTEJan 22 2025
R-4.4-winNOTEJan 22 2025
R-4.4-macNOTEJan 22 2025
R-4.3-winOKDec 23 2024
R-4.3-macERRORDec 23 2024

Exports::=.dataas_labelas_nameclustercreate_objectenquoenquosplot_distributionplot_drplot_heatmapplot_spatialrun_umaptransform

Dependencies:abindaskpassassortheadbeachmatBHBiobaseBiocFileCacheBiocGenericsBiocNeighborsBiocParallelBiocSingularbitbit64blobblustercachemcirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdoParalleldplyrdqrngedgeRfansifarverfastmapfilelockFNNforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2ggsciGlobalOptionsgluegtablehmshttrigraphIRangesirlbaisobanditeratorsjanitorjsonlitelabelinglambda.rlatticelifecyclelimmalocfitlubridatemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemetapodmgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6RColorBrewerRcppRcppAnnoyRcppEigenRcppProgressreadrrjsonrlangRSpectraRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesscattermorescranscuttleshapeSingleCellExperimentsitmosnakecasesnowSparseArraySpatialExperimentstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttimechangetzdbUCSC.utilsutf8uwotvctrsviridisLitevroomwithrXVector