Package: copynumber
Title: Segmentation of Single- and Multi-Track Copy Number Data by
        Penalized Least Squares Regression (with hg38/mm10/mm39)
Version: 2.0.0
Authors@R: c(
    person("Gro", "Nilsen", , "gronilse@ifi.uio.no", role = c("aut", "cre")),
    person("Knut", "Liestol", role = "aut"),
    person("Ole Christian", "Lingjaerde", role = "aut"),
    person("Igor", "Dolgalev", , "igor.dolgalev@nyumc.org", role = "aut",
           comment = c(ORCID = "0000-0003-4451-126X"))
  )
Description: Penalized least squares regression is applied to fit
        piecewise constant curves to copy number data to locate genomic
        regions of constant copy number. Procedures are available for
        individual segmentation of each sample, joint segmentation of
        several samples and joint segmentation of the two data tracks
        from SNP-arrays. Several plotting functions are available for
        visualization of the data and the segmentation results.
License: Artistic-2.0
URL: https://igordot.github.io/copynumber/
BugReports: https://github.com/igordot/copynumber/issues
Depends: R (>= 4.2)
Imports: BiocGenerics, GenomicRanges, IRanges, S4Vectors
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
BuildResaveData: best
Config/roxygen2/version: 8.1.0
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: yes
Roxygen: list(markdown = TRUE)
Repository: https://igordot.r-universe.dev
Date/Publication: 2026-09-03 15:54:04 UTC
RemoteUrl: https://github.com/igordot/copynumber
RemoteRef: HEAD
RemoteSha: f8f1ef2fe400788277c21a4fd5146baa2ccc245c
NeedsCompilation: no
Packaged: 2026-10-16 11:12:32 UTC; root
Author: Gro Nilsen [aut, cre],
  Knut Liestol [aut],
  Ole Christian Lingjaerde [aut],
  Igor Dolgalev [aut] (ORCID: <https://orcid.org/0000-0003-4451-126X>)
Maintainer: Gro Nilsen <gronilse@ifi.uio.no>