NEWS

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clustermole 1.2.0 (2026-10-07)

• Known gene aliases in the source databases are converted to canonical gene symbols.
• Adds HPA, ScType, CellTaxonomy, CellMatch, and DISCO databases.
• Updates CellMarker to version 3.
• Removes the ARCHS4 marker database because most of its signatures contain too many genes.
• Refreshes the markers from all source databases.
• clustermole_enrichment() gains max_rank to control the rank cutoff.
• clustermole_enrichment() accepts data frames and automatically converts them to matrices.
• clustermole_enrichment() removes duplicate marker genes within signatures before analysis.
• clustermole_markers() computes species-specific signature gene counts.
• clustermole_markers() excludes genes without a symbol for the requested species.
• clustermole_overlaps() gains max_p and max_fdr cutoffs.
• clustermole_overlaps() uses the proportion of mismatched genes for its species-mismatch check.
• clustermole_overlaps() removes duplicate marker genes within signatures before analysis.

clustermole 1.1.1 (2024-01-08)

• Fixes compatibility issues with GSVA and tidyselect.

clustermole 1.1.0 (2021-01-26)

• clustermole_enrichment() gains a singscore method.
• clustermole_enrichment() gains a combined enrichment method.
• Refreshes the markers from all source databases.

clustermole 1.0.1 (2020-01-27)

• Documentation is improved.

clustermole 1.0.0 (2020-01-20)

• Initial CRAN submission.