{
  "_id": "6acb7d94fe5cc25786e90c0c",
  "Type": "Package",
  "Package": "clustermole",
  "Title": "Cell Type Marker Database for Single-Cell RNA-Seq Data",
  "Version": "1.2.0",
  "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-4451-126X\"))",
  "Description": "Provides a meta-database of thousands of human and mouse\ncell identity markers curated from multiple sources, along with\nmethods for cell type prediction based on marker gene overlaps\nor gene set enrichment.",
  "License": "MIT + file LICENSE",
  "URL": "https://igordot.github.io/clustermole/",
  "BugReports": "https://github.com/igordot/clustermole/issues",
  "biocViews": "",
  "Config/roxygen2/version": "8.1.0",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://igordot.r-universe.dev",
  "Date/Publication": "2026-10-07 02:23:37 UTC",
  "RemoteUrl": "https://github.com/igordot/clustermole",
  "RemoteRef": "v1.2.0",
  "RemoteSha": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-11 12:09:45 UTC",
    "User": "root"
  },
  "Author": "Igor Dolgalev [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4451-126X>)",
  "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
  "_user": "igordot",
  "_type": "src",
  "_file": "clustermole_1.2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/f0ec3b5ca5bd3537077b97d7d2d3fb9e646b74d4d893bf44a0b79d4e110d18d9",
  "_filesize": 2235366,
  "_sha256": "f0ec3b5ca5bd3537077b97d7d2d3fb9e646b74d4d893bf44a0b79d4e110d18d9",
  "_expires": "2027-01-19T12:14:10.000Z",
  "_created": "2026-10-11T12:09:45.000Z",
  "_published": "2026-10-11T12:14:12.481Z",
  "_buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114466512535,
      "time": 218,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11702222362"
    },
    {
      "job": 114466512540,
      "time": 201,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11701343004"
    },
    {
      "job": 114466512571,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11702292091"
    },
    {
      "job": 114466512601,
      "time": 150,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11702237239"
    },
    {
      "job": 114465659396,
      "time": 274,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11701222985"
    },
    {
      "job": 114466512526,
      "time": 166,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11701623665"
    },
    {
      "job": 114466512563,
      "time": 189,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11702017800"
    },
    {
      "job": 114466512589,
      "time": 170,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11701477718"
    },
    {
      "job": 114466512615,
      "time": 183,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11701663537"
    }
  ],
  "_upstream": "https://github.com/igordot/clustermole",
  "_commit": {
    "id": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
    "author": "igor <6363505+igordot@users.noreply.github.com>",
    "committer": "igor <6363505+igordot@users.noreply.github.com>",
    "message": "Prepare for CRAN release 1.2.0\n",
    "time": 1791339817
  },
  "_maintainer": {
    "name": "Igor Dolgalev",
    "email": "igor.dolgalev@nyumc.org",
    "login": "igordot",
    "description": "",
    "uuid": 6363505,
    "orcid": "0000-0003-4451-126X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "GSEABase",
      "role": "Suggests"
    },
    {
      "package": "GSVA",
      "version": ">= 1.50.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "singscore",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "igordot",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-38",
      "n": 17
    },
    {
      "week": "2026-40",
      "n": 11
    },
    {
      "week": "2026-41",
      "n": 12
    }
  ],
  "_tags": [
    {
      "name": "v1.2.0",
      "date": "2026-10-07"
    }
  ],
  "_topics": [
    "cell-type",
    "cell-type-annotation",
    "cell-type-classification",
    "cell-type-identification",
    "cell-type-matching",
    "gene-expression-signatures",
    "scrna-seq",
    "single-cell"
  ],
  "_stars": 15,
  "_contributors": [
    {
      "user": "igordot",
      "count": 91,
      "uuid": 6363505
    }
  ],
  "_userbio": {
    "uuid": 6363505,
    "type": "user",
    "name": "igor",
    "followers": 132
  },
  "_downloads": {
    "count": 745,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/clustermole"
  },
  "_devurl": "https://github.com/igordot/clustermole",
  "_pkgdown": "https://igordot.github.io/clustermole/",
  "_searchresults": 45,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/clustermole.html",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/igordot/clustermole",
  "_realowner": "igordot",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2020-01-20"
    },
    {
      "version": "1.0.1",
      "date": "2020-01-27"
    },
    {
      "version": "1.1.0",
      "date": "2021-01-26"
    },
    {
      "version": "1.1.1",
      "date": "2024-01-08"
    },
    {
      "version": "1.2.0",
      "date": "2026-10-07"
    }
  ],
  "_exports": [
    "clustermole_enrichment",
    "clustermole_markers",
    "clustermole_overlaps",
    "read_gmt"
  ],
  "_help": [
    {
      "page": "clustermole_enrichment",
      "title": "Cell types based on the expression of all genes",
      "topics": [
        "clustermole_enrichment"
      ]
    },
    {
      "page": "clustermole_markers",
      "title": "Available cell type markers",
      "topics": [
        "clustermole_markers"
      ]
    },
    {
      "page": "clustermole_overlaps",
      "title": "Cell types based on overlap of marker genes",
      "topics": [
        "clustermole_overlaps"
      ]
    },
    {
      "page": "read_gmt",
      "title": "Read a GMT file into a data frame",
      "topics": [
        "read_gmt"
      ]
    }
  ],
  "_readme": "https://github.com/igordot/clustermole/raw/v1.2.0/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "rlang",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_score": 5.005395031886707,
  "_indexed": true,
  "_nocasepkg": "clustermole",
  "_universes": [
    "igordot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-11T12:12:33.000Z",
      "distro": "resolute",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/e96f7d21e4aa9cec07f40bbb6d07b7e5ddf61be2e740db9545268dd505c9f340",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-10-11T12:12:27.000Z",
      "distro": "resolute",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/f09432b20704ce8b3dfbf88ded7a54719525b856b09f04457ecbcece6b31c560",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-10-11T12:11:52.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/6713145fcef657d946bded1f5f9a8c75d86a11e1bb2a199e69df4996bab65bde",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-10-11T12:11:43.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/83b6461c90fceaa8722ff4048a663687fdc12cd5ec6e7ff1dd6dd76e7d570536",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-10-11T12:12:48.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/05b348519ef5af01cbeb10d6b8077d7b3de516718621f49892333a389abfdce9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-11T12:11:40.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/1133838005c392547f9ed8547a30c272be3fa3d0817f5b21c94050961539c77a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-11T12:12:00.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/8144ec9f9e380d8a39dd5ea5650869692b156e4088a90572a556b58e387670b5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-10-11T12:11:39.000Z",
      "commit": "2eeeea5d6335070b395b8b8d57f7d4867acb3f82",
      "fileid": "https://r2.ropensci.org/d38a4ecb7fb75a7ab9361a45ceb852b9e567467c51ea939e8dd4bab11625ee4f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/38137944218"
    }
  ]
}