{
  "_id": "6a1f2e53b401979e73426a33",
  "Type": "Package",
  "Package": "babelgene",
  "Title": "Gene Orthologs for Model Organisms in a Tidy Data Format",
  "Version": "22.9",
  "Authors@R": "person(\"Igor\", \"Dolgalev\", , \"igor.dolgalev@nyumc.org\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-4451-126X\"))",
  "Description": "Genomic analysis of model organisms frequently requires\nthe use of databases based on human data or making comparisons\nto patient-derived resources. This requires harmonization of\ngene names into the same gene space. The 'babelgene' R package\nconverts between human and non-human gene orthologs/homologs.\nThe package integrates orthology assertion predictions sourced\nfrom multiple databases as compiled by the HGNC Comparison of\nOrthology Predictions (HCOP) (Wright et al. 2005\n<doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007\n<doi:10.1093/bib/bbl030>, Seal et al. 2011\n<doi:10.1093/nar/gkq892>).",
  "License": "MIT + file LICENSE",
  "URL": "https://igordot.github.io/babelgene/",
  "BugReports": "https://github.com/igordot/babelgene/issues",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.1",
  "Repository": "https://igordot.r-universe.dev",
  "Date/Publication": "2022-09-28 17:52:11 UTC",
  "RemoteUrl": "https://github.com/igordot/babelgene",
  "RemoteRef": "v22.9",
  "RemoteSha": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 09:31:00 UTC",
    "User": "root"
  },
  "Author": "Igor Dolgalev [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-4451-126X>)",
  "Maintainer": "Igor Dolgalev <igor.dolgalev@nyumc.org>",
  "MD5sum": "d197523dcd17676e30be56d248ce12a8",
  "_user": "igordot",
  "_type": "src",
  "_file": "babelgene_22.9.tar.gz",
  "_fileid": "dfcc3a8b7c23a02e70b41e907fd3637bb93e1058a7624f71a42a9f2da8149d9e",
  "_filesize": 3733466,
  "_sha256": "dfcc3a8b7c23a02e70b41e907fd3637bb93e1058a7624f71a42a9f2da8149d9e",
  "_created": "2026-05-15T09:31:00.000Z",
  "_published": "2026-06-02T19:26:10.993Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79154108404,
      "time": 150,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7014147870"
    },
    {
      "job": 79154108129,
      "time": 152,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014148075"
    },
    {
      "job": 79154108308,
      "time": 95,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7014131249"
    },
    {
      "job": 79154108353,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014137161"
    },
    {
      "job": 79154107813,
      "time": 208,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014102705"
    },
    {
      "job": 79154107332,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367703245"
    },
    {
      "job": 79154108192,
      "time": 117,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7014137544"
    },
    {
      "job": 79154108564,
      "time": 107,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7014134392"
    },
    {
      "job": 79154108460,
      "time": 106,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7014134363"
    }
  ],
  "_buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/igordot/babelgene",
  "_commit": {
    "id": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
    "author": "igor <6363505+igordot@users.noreply.github.com>",
    "committer": "igor <6363505+igordot@users.noreply.github.com>",
    "message": "Prepare for CRAN release\n",
    "time": 1664387531
  },
  "_maintainer": {
    "name": "Igor Dolgalev",
    "email": "igor.dolgalev@nyumc.org",
    "login": "igordot",
    "uuid": 6363505,
    "orcid": "0000-0003-4451-126X"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "igordot",
  "_selfowned": true,
  "_usedby": 29,
  "_updates": [],
  "_tags": [],
  "_stars": 15,
  "_contributors": [
    {
      "user": "igordot",
      "count": 31,
      "uuid": 6363505
    }
  ],
  "_userbio": {
    "uuid": 6363505,
    "type": "user",
    "name": "igor"
  },
  "_downloads": {
    "count": 15284,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/babelgene"
  },
  "_devurl": "https://github.com/igordot/babelgene",
  "_pkgdown": "https://igordot.github.io/babelgene/",
  "_searchresults": 80,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/babelgene.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/igordot/babelgene",
  "_realowner": "igordot",
  "_cranurl": true,
  "_releases": [
    {
      "version": "21.4",
      "date": "2021-04-26"
    },
    {
      "version": "22.3",
      "date": "2022-03-30"
    },
    {
      "version": "22.9",
      "date": "2022-09-29"
    }
  ],
  "_exports": [
    "orthologs",
    "species"
  ],
  "_help": [
    {
      "page": "orthologs",
      "title": "Retrieve gene orthologs/homologs",
      "topics": [
        "orthologs"
      ]
    },
    {
      "page": "species",
      "title": "Retrieve the available species",
      "topics": [
        "species"
      ]
    }
  ],
  "_readme": "https://github.com/igordot/babelgene/raw/v22.9/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "babelgene-intro.Rmd",
      "filename": "babelgene-intro.html",
      "title": "Introduction to babelgene",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Usage",
        "Details"
      ],
      "created": "2021-04-23 23:58:42",
      "modified": "2022-09-23 19:56:17",
      "commits": 6
    }
  ],
  "_score": 8.901907532018633,
  "_indexed": true,
  "_nocasepkg": "babelgene",
  "_universes": [
    "igordot"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "22.9",
      "date": "2026-05-15T09:33:19.000Z",
      "distro": "noble",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "19f5cc1fa63097a43d387056f5a02b030ef679fd375c6948a331393b6ec8109a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "22.9",
      "date": "2026-05-15T09:33:20.000Z",
      "distro": "noble",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "9aa0de1286988d81ff4b4dc21356b0ffe71b29eacc0c7a4bec1da99f0373df0d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "22.9",
      "date": "2026-05-15T09:32:37.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "d042712ad27bf6d9a117bf2dab7583aba99cb57347c1214071b45ce8853e9a41",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "22.9",
      "date": "2026-05-15T09:32:51.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "44c050ca0f1a1999e9cefebd7d5e831685f375c8ae290e41ee04b26ec195b7d1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "22.9",
      "date": "2026-05-15T09:32:34.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "781cbfabf76a41aa98313a02d715d1cd733a0f53e9d484e9923d5fa4da27f80a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "22.9",
      "date": "2026-05-15T09:32:29.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "4286dfcf38333614b39b98fda822454c679e9cf5eaeef8735ec3efca15025b97",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "22.9",
      "date": "2026-05-15T09:32:27.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "9721a7d1885a8227d0dd21b9a685539d6b22e961e9ee5099fe1aac280badace0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "22.9",
      "date": "2026-06-02T19:25:35.000Z",
      "commit": "ab61c529e31ce0bc1d0c17ef9c18bfa1bed41eb6",
      "fileid": "752bba2cdec113f178982c2bf84e6aaa52da93ba6c1a9b28bff2cb183ee78e01",
      "status": "success",
      "buildurl": "https://github.com/r-universe/igordot/actions/runs/25910570243"
    }
  ]
}